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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815271.1_cds_XP_016498251.1_12302
CDS Infomation

[gene=LOC107816999] [db_xref=GeneID:107816999] [protein=probable rhamnogalacturonate lyase B] [protein_id=XP_016498251.1] [location=complement(join(14887..15132,15230..15356,15633..15761,15851..16010,16670..16811,16913..17003,17101..17207,17294..17452))] [gbkey=CDS]
Sequence

ATGTTGTTTAGTACACATTATGCTGGAGATATTCTAGCACTAAGATTTCGAAATGGAGAG
CCCTGGAAAAAGGTTTTTGGCCCTGTTTATATCTACCTAAATTCTGTCTCATCTGATGAT
GAAGATATTCTCACACTATGGACAGATGCAAAGGAACAGATGTTAATAGAAACCGAAAAT
TGGCCATACGATTTCCCTCTTTCGCAAGATTTCGTTACAGCTGATCAGCGAGGTACTGTA
AGTGGCAGATTACTCATTAGCGACAGCTATGTAAGTAAAAGACTTATCACTGCAAATTCT
GCTTTCATTGGGTTGGCTGCACCTGGAGATGTAGGGTCATGGCAAACTGAAAATAAGGGT
TATCAATTTTGGACTCAAACAGATAATGAAGGATATTTTTTGATTAAAAATATCATCCCA
GGCAATTATAGCCTGTATGCTTGGGTTCCTGGATTTATTGGTGATTACAAATTCAAGAAC
TACATCAACATTACCCCAGGATCAAGAACTAGGCTGCAAACTCTAGTGTATAACCCTCCA
AGGAATGGGCCAACATTGTGGGAAATAGGCATTCCTGAAAGAACTGCTGCAGAATTTTTC
ATTCCTAATCCACAACCAAGACTCCAAAACCAGTTATACATCGAACATTACGCAGAAAAG
TTTAGGCAATATGGACTATGGGATAGTTACACACAACTATACCCTAATGATGATTTAATC
TACACTGTTGGATCAAGCAACTATCAAACAGATTGGTTCTTTGCTCATGTAAATAGATGT
ACTTTCAACGATGAAGGGAACAAAACATATATACCAACAACATGGCAAATTGTGTTTGAT
CTTCAAGAAGTGGAGAAGTCTTCAAATTATACACTTCAGCTAGCATTGGCTTCAATAAAT
GAAGCTGAATTACAAATTCGAGTAAACGATCAAGATGCAGATCATGTACCTCACTTTACG
ACAGGGTTGATAGGCAAAGATAACGTGATTGCAAGACATGGAATTCATGGATTGTATTGG
TTGTATAGTATAAATGTCCCTGGATTTCTTTTTGCTACTGGAAAAAATGTTATATTTCTT
AAGCAAAGTAGAGGTTCAAGCCCCTGGAGTGGACTCATGTATGATTATATTCGACTTGAA
GGCCCTCCTGCAAATGATTAA

Peptide Sequence

PEP ID

XP_016498251.1
PEP Infomation

PREDICTED: probable rhamnogalacturonate lyase B [Nicotiana tabacum]
Sequence

MLFSTHYAGDILALRFRNGEPWKKVFGPVYIYLNSVSSDDEDILTLWTDAKEQMLIETEN
WPYDFPLSQDFVTADQRGTVSGRLLISDSYVSKRLITANSAFIGLAAPGDVGSWQTENKG
YQFWTQTDNEGYFLIKNIIPGNYSLYAWVPGFIGDYKFKNYINITPGSRTRLQTLVYNPP
RNGPTLWEIGIPERTAAEFFIPNPQPRLQNQLYIEHYAEKFRQYGLWDSYTQLYPNDDLI
YTVGSSNYQTDWFFAHVNRCTFNDEGNKTYIPTTWQIVFDLQEVEKSSNYTLQLALASIN
EAELQIRVNDQDADHVPHFTTGLIGKDNVIARHGIHGLYWLYSINVPGFLFATGKNVIFL
KQSRGSSPWSGLMYDYIRLEGPPAND

Transcript Sequence

Gene sequence data has not been registered.